
Do you have crooked or misaligned teeth, and have you decided to align them using clear aligners? You have surely made the right choice. You are now one step closer to achieving that dreamy smile you have always wished for. But here’s something that’s just as important as wearing your aligners regularly—keeping them clean. Yes, you heard it right! Those seemingly "invisible" aligners can harbor some not-so-invisible bacteria if neglected. Whether you’re new to aligners or looking to step up your routine, this blog has got you covered with practical, easy-to-follow aligner cleaning tips that will keep your trays fresh, clear, and odor-free.
Why Aligner Cleaning Matters
Just think about it! Your aligners are in your mouth for 20–22 hours a day. They come in direct contact with food particles, saliva, and bacteria. Without proper cleaning, they can get cloudy, smelly, and even become a breeding ground for harmful germs. Not to mention, dirty aligners can affect your oral health and slow down your treatment progress.
That's why good, clear aligner care isn’t just about aesthetics, it’s about hygiene, comfort, and maximizing the benefits of your orthodontic treatment.
Clear Aligner Care: How Often Should You Clean Them

This is one of the most common questions people ask when starting their aligner journey: "How often should I clean my aligners?" The quick answer? At least twice a day. Just like brushing your teeth, your aligners need a proper routine
Morning and Night Cleaning
Your aligners need a morning and nighttime cleaning routine. When you wake up or when you go to sleep, give your aligners a thorough cleaning to remove any bacteria or plaque that may have built up.
When You Remove Them
It’s a good habit to rinse your aligners every time you take them out. Whether you’re eating, drinking something other than water, or brushing your teeth, give your aligners a quick rinse before setting them aside.
Before Putting Them in
Before popping your aligners back in, rinse them again. This keeps them clean and fresh, and ensures that you’re not trapping any debris or bacteria against your teeth.
Cleaning vs Rinsing Clear Aligners
Let’s clear up a common misconception: rinsing is not the same as cleaning, and it’s important to know the difference if you want to keep your aligners in top shape.
Rinsing
Rinsing your aligners with water is great for quick refreshes throughout the day. It helps wash away surface-level saliva, food particles, and other debris. But here’s the catch: rinsing alone doesn’t cut it when it comes to hygiene.
Cleaning
Cleaning your aligners is a more thorough process. It usually means gently scrubbing them with a soft toothbrush and a clear, gentle soap (or using an aligner cleaning solution provided by ALIGNERCO). This step removes built-up plaque, bacteria, and any odors that rinsing simply can’t handle.
Best Aligner Cleaning Methods

Wondering how to clean clear aligners the right way? Here are the most effective and dentist-approved methods.
Home-based Cleaning Methods
Here are the quick and easy ways to clean your clear aligners at home.
Antibacterial Soap Soak
Mix a small amount of mild antibacterial soap with lukewarm water in a bowl. Once it starts bubbling, soak your aligners for 20–30 minutes. Rinse them well with cold water afterward.
White Vinegar Solution
Combine one tablespoon of white vinegar with warm water in a cup. Soak your aligners for 15–20 minutes, then rinse thoroughly with cold water and let them dry before wearing.
Baking Soda Soak
Stir a tablespoon of baking soda into a cup of water and let your aligners soak for 30–60 minutes. Rinse well and let dry before use.
Clean With Gentle Toothbrush
If you're in a rush, lightly brush your aligners using non-abrasive toothpaste and a soft, unused toothbrush. Avoid using your regular brush, as leftover gritty paste can scratch the plastic. This method should be a last resort.
Professional Cleaning Methods
If you’re looking to level up your cleaning routine, or if your aligners are starting to look cloudy or feel a bit funky, professional cleaning methods can help you out.
Ultrasonic Cleaner
These handy little devices use sound wave technology to create gentle vibrations in water, which effectively remove buildup from every little corner of your aligners. They’re great for reaching tight spots that brushing might miss and can leave your trays feeling like new.
Cleaning Foams and Gels
These foams are among the most popular invisible braces cleaning solutions due to their ease of use and fast action. Just apply it to the aligners, spread evenly, and let them sit for a few minutes before rinsing. They’re great for eliminating odors and removing surface stains, especially if you’ve been sipping on coffee or tea.
Why Consistency Matters
Your aligners are a big part of your smile transformation, and they need a little care to do their job properly. Regular cleaning isn’t just about hygiene, it helps keep your aligners. Here is why you should remain consistent in cleaning your aligners:
- To keep them crystal clear and stain-free
- So they remain odor-free
- So they remain comfortable to wear
- Regular cleaning decreases the risk of infections and irritation
What to Avoid While Invisible Aligner Maintenance
Here are a few no-nos when it comes to clear aligner care:
Hot Water
Never use hot or boiling water. It can warp your aligners and ruin their fit.
Toothpaste
Most toothpastes are abrasive and can scratch your aligners, making them more noticeable.
Colored or Scented Soaps
These can stain your aligners or leave behind a nasty taste.
Skipping Cleaning
Even one skipped cleaning can lead to bacterial buildup and bad breath.
Final Aligner Hygiene Tips
Caring for your clear aligners doesn’t have to be complicated, but it does have to be consistent. Just like brushing and flossing, cleaning your aligners should become part of your daily routine. It’s the little steps, like rinsing when you remove them, soaking them in a gentle solution, or brushing them with care. This makes a big difference in your overall oral health and the success of your treatment.
Remember, your aligners are working hard to give you that beautiful, confident smile. All they ask in return is a few minutes of daily care. So, treat them right, keep them clean, clear, and fresh, and you’ll be smiling brighter in no time.
FAQs
How do you clean invisible aligners?
Rinse your aligners with water every night. Brush your aligners with a soft-bristled toothbrush and gentle, clear liquid soap to remove any debris or food particles accumulated during the day. Rinse thoroughly after brushing.
Is it better to clean the invisible aligner with soap or toothpaste?
It’s better to clean Invisalign with a gentle, clear antibacterial soap rather than toothpaste. Most toothpastes are abrasive and can scratch or cloud the aligners. Soap effectively removes bacteria without damaging the plastic.
What are the best invisible braces cleaning solutions for daily use?
The best invisible braces cleaning solutions include gentle antibacterial foams and ALIGNERCO’s daily aligner cleaner. These help eliminate bacteria, odor, and plaque buildup without damaging your trays.
How to keep the invisible aligner from smelling?
To avoid smelly clear aligners, simply brush your aligners every time you take them out.
References
Crna, R. N. M. (2020, October 19). How to clean Invisalign: do’s, don’ts, and best practices. Healthline. https://www.healthline.com/health/how-to-clean-invisalign#best-cleaning-practices